Research Publications

Page Updated On :06-03-2021

Research Publications (2019-20)

  1. Aggarwal R, Sharma S, Singh K, Gurjar MS, Saharan MS, Gupta S, Bashyal BM, Gaikwad K. First Draft Genome Sequence of Wheat Spot Blotch Pathogen Bipolaris sorokiniana BS_112 from India, Obtained Using Hybrid Assembly. Microbiology Resource Announcements. 2019 Sep 19;8(38):e00308-19.
  2. Ajay J, Vandna R. CRISPR-Cas systems ushered in an era of facile DNA-free genome editing. In Seminars in cell & developmental biology 2019 Dec (Vol. 96, p. 1).
  3. Aminedi R, Dhatwalia D, Jain V, Bhattacharya R. High efficiency in planta transformation of Indian mustard (Brassica juncea) based on spraying of floral buds. Plant Cell, Tissue and Organ Culture. 2019 Aug 1;138(2):229-37.
  4. Ansari WA, Atri N, Ahmad J, Qureshi MI, Singh B, Kumar R, Rai V, Pandey S. Drought mediated physiological and molecular changes in muskmelon (Cucumis melo L.). PloS one. 2019 Sep 24;14(9):e0222647.
  5. Awana M, Yadav K, Rani K, Gaikwad K, Praveen S, Kumar S, Singh A. Insights into Salt Stress-Induced Biochemical, Molecular and Epigenetic Regulation of Spatial Responses in Pigeonpea (Cajanus cajan L.). Journal of Plant Growth Regulation. 2019 Dec 1;38(4):1545-61.
  6. Bandeppa S, PC L, Phule AS, Rajani G, Prasad Babu KV, Barbadikar KM, Chandrakala C, Prasad Babu MB, Mandal PK, Sundaram RM. Isolation, identification and characterization of efficient free-living nitrogen-fixing bacteria from rice rhizosphere ecosystem. Journal of Rice Research. 2019;12(2):38.
  7. Bashyal BM, Aggarwal R, Rawat K, Sharma S, Gupta AK, Choudhary R, Bhat J, Krishnan SG, Singh AK. Genetic diversity and population structure of Fusarium fujikuroi causing Bakanae, an emerging disease of rice in India.2019 ., 58: 45-52
  8. Bashyal BM, Yadav J, Gupta AK, Aggarwal R. Understanding the secondary metabolite production of Gibberella fujikuroi species complex in genomic era. Indian Phytopathology. 2019:1-1.
  9. Bharadwaj N, Barthakur S, Biswas AD, Das MK, Kour M, Ramteke A, Gogoi N. Transcript expression profiling in two contrasting cultivars and molecular cloning of a SKP-1 like gene, a component of SCF-ubiquitin proteasome system from mungbean Vigna radiate L. Scientific reports. 2019 May 30;9(1):1-7.
  10. Bhat JA, Shivaraj SM, Singh P, Navadagi DB, Tripathi DK, Dash PK, Solanke AU, Sonah H, Deshmukh R. Role of silicon in mitigation of heavy metal stresses in crop plants. Plants. 2019 Mar;8(3):71.
  11. Chaudhury A, Kaila T, Gaikwad K. Elucidation of Galactomannan Biosynthesis Pathway Genes through Transcriptome Sequencing of Seeds Collected at Different Developmental Stages of Commercially Important Indian Varieties of Cluster Bean (Cyamopsis tetragonoloba L.). Scientific reports. 2019 Aug 8;9(1):1-7.
  12. Choudhary DK, Aggarwal R, Bashyal BM, Shanmugam V, Padaria JC. Phenotyping and marker based identification of resistant lines in wheat (Triticum aestivum) against spot blotch pathogen (Cochliobolus sativus). Indian Journal of Agricultural Sciences. 2019 Nov 1;89(11):133-7.
  13. Das A, Nigam D, Junaid A, Tribhuvan KU, Kumar K, Durgesh K, Singh NK, Gaikwad K. Expressivity of the key genes associated with seed and pod development is highly regulated via lncRNAs and miRNAs in Pigeonpea. Scientific reports. 2019 Dec 3;9(1):1-4.
  14. Divte P, Yadav P, kumar Jain P, Paul S, Singh B. Ethylene regulation of root growth and phytosiderophore biosynthesis determines iron deficiency tolerance in wheat (Triticum spp). Environmental and Experimental Botany. 2019 Jun 1;162:1-3.
  15. Durgesh K, Joshi R, Kumar K, Gaikwad K, Raje RS, Prashat GR. Inheritance pattern of cold tolerance in pigeonpea . Indian J. Genet. 2019 May 1;79(2):404-10.
  16. Farhat S, Jain N, Singh N, Sreevathsa R, Dash PK, Rai R, Yadav S, Kumar P, Sarkar AK, Jain A, Singh NK. CRISPR-Cas9 directed genome engineering for enhancing salt stress tolerance in rice. In Seminars in cell & developmental biology 2019 Dec 1 (Vol. 96, pp. 91-99). Academic Press.
  17. Guha PK, Mazumder A, Das A, Pani DR, Mondal TK. In silico identification of long non-coding RNA based simple sequence repeat markers and their application in diversity analysis in rice. Gene Reports. 2019 Sep 1;16:100418.
  18. Gupta NC, Gupta RK, Rao M, Kumar A. Combining the Sclerotinia stem rot disease resistance trait in interspecific hybrids of Brassica napus and Brassica carinata. Annals of Plant Protection Sciences. 2019;27(1):70-6.
  19. Gupta OP, Dahuja A, Sachdev A, Jain PK, Kumari S, Praveen S. Cytosine Methylation of Isoflavone Synthase Gene in the Genic Region Positively Regulates Its Expression and Isoflavone Biosynthesis in Soybean Seeds. DNA and cell biology. 2019 Jun 1;38(6):510-20.
  20. Gupta OP, Dahuja A, Sachdev A, Kumari S, Jain PK, Vinutha T, Praveen S. Conserved miRNAs modulate the expression of potential transcription factors of isoflavonoid biosynthetic pathway in soybean seeds. Molecular biology reports. 2019 Aug 15;46(4):3713-30
  21. Gurjar MS, Aggarwal R, Jogawat A, Kulshreshtha D, Sharma S, Solanke AU, Dubey H, Jain RK. De novo genome sequencing and secretome analysis of Tilletia indica inciting Karnal bunt of wheat provides pathogenesis-related genes. 3 Biotech. 2019 Jun 1;9(6):219.
  22. Harshavardhana YS, Hegde V, Tripathi S, Raje RS, Jain PK, Gaikwad K, Bharadwaj C, Kumar R, Singh RK, Sharma MK, Chauhan SK. Genetics of semi-determinacy and identification of molecular marker linked to Dt1 locus in chickpea (Cicer arietinum L.). Indian J. Genet. 2019;79(1 Suppl 270):275.
  23. Hasegawa D, Kito K, Maeda T, Rai V, Cha-Um S, Tanaka Y, Fukaya M, Takabe T. Functional characterization of aminotransferase involved in serine and aspartate metabolism in a halotolerant cyanobacterium, Aphanothece halophytica. Protoplasma. 2019 Nov 1;256(6):1727-36.
  24. Jain P, Dubey H, Singh PK, Solanke AU, Singh AK, Sharma TR. Deciphering signalling network in broad spectrum Near Isogenic Lines of rice resistant to Magnaporthe oryzae. Scientific reports. 2019 Nov 15;9(1):1-3.
  25. Jaiswal P and Barthakur S. Optimization of an in vitro regeneration protocol for hexaploid wheat using immature embryo as explants. Ann. Agric. Res.(2019)  New Series 40 (4): 1-7 .
  26. Jasdeep P, Avijit T, Varsha S, Harinder V, Sanjay S. Cultivar specific response of callus induction and plant regeneration from mature embryos in different elite Indian wheat. Research Journal of Biotechnology. 2019 Feb 1;14(2):1-8.
  27. Joshi I, Kumar A, Singh AK, Kohli D, Raman KV, Sirohi A, Chaudhury A, Jain PK. Development of nematode resistance in Arabidopsis by HD-RNAi-mediated silencing of the effector gene Mi-msp2. Scientific reports. 2019 Nov 22;9(1):1-1.
  28. Jyoti A, Kaushik S, Srivastava VK, Datta M, Kumar S, Yugandhar P, Kothari SL, Rai V, Jain A. The potential application of genome editing by using CRISPR/Cas9, and its engineered and ortholog variants for studying the transcription factors involved in the maintenance of phosphate homeostasis in model plants. In Seminars in Cell & Developmental Biology 2019 Dec 1 (Vol. 96, pp. 77-90). Academic Press
  29. Kaila T, Saxena S, Ramakrishna G, Tyagi A, Tribhuvan KU, Srivastava H, Chaudhury A, Singh NK, Gaikwad K. Comparative RNA editing profile of mitochondrial transcripts in cytoplasmic male sterile and fertile pigeonpea reveal significant changes at the protein level. Molecular biology reports. 2019 Apr 1;46(2):2067-84.
  30. Kalia V, Kaur S. Efficacy of transgenic tobacco carrying synthetic plant-preferred codon-optimized novel VIP3AA44 Gene towards Helicoverpa armigera and Spodoptera litura. Indian Journal of Entomology. 2019;81(2):325-31.
  31. Koramutla MK, Ram C, Bhatt D, Annamalai M, Bhattacharya R. Genome-wide identification and expression analysis of sucrose synthase genes in allotetraploid Brassica juncea. Gene. 2019 Jul 30;707:126-35
  32. Lata S, Watts A, Bhat SR. Characterization of Arabidopsis thaliana lines with T-DNA insertions in the mitochondrial ribosomal protein genes Rps14 and Rps19. Indian J. Genet. 2019 May 1;79(2):467-73
  33. Maibam A, Vishwakarma H, Padaria JC. In silico studies predict role of PgUCP1 from Pennisetum glaucum in heat stress tolerance. Indian Journal of Agriculture Science. 2019 Oct 1;89(10):1703-7.
  34. Mainkar PS, Agarwal Y,Kansal R,  Efficient and Modified CTAB and Trizol protocols improve High Molecular Weight RNA isolation from polyphenol and polysachharides rich pigeonpea (Cajanus cajan (L.) Millsp. IJEB (Accepted) 2019
  35. Mandal PK, Rai S, Kaushik M, Sinha SK, Gupta RK, Mahendru A. Transcriptome data of cultivated tetraploid and hexaploid wheat variety during grain development. Data in brief. 2019 Feb 1;22:551
  36. Mehraj U, Panwar S, Kanwar PS, Namita RP, Amolkumar US, Mallick N, Kumar S. Assessment of clonal fidelity of doubled haploid line of marigold (Tagetes erecta) using microsatellite markers. Indian Journal of Agricultural Sciences. 2019 Jul 1;89(7):1162-6.
  37. Panwar BS, Kaur S. Structural characterization and heterologous expression of a new cyt gene cloned from Bacillus thuringiensis. Journal of molecular modeling. 2019 May 1;25(5):136
  38. Pradhan SK, Pandit E, Pawar S, Bharati B, Chatopadhyay K, Singh S, Dash P, Reddy JN. Association mapping reveals multiple QTLs for grain protein content in rice useful for biofortification. Molecular Genetics and Genomics. 2019 Aug 1;294(4):963-83.
  39. Rafiqi UN, Gul I, Saifi M, Nasrullah N, Ahmad J, Dash P, Abdin MZ. Cloning, identification, and in silico analysis of terpene synthases involved in the competing pathways of artemisinin biosynthesis pathway in Artemisia annua L. Pharmacognosy Magazine. 2019 Apr 1;15(62):38.
  40. Ramkumar MK, Senthil Kumar S, Gaikwad K, Pandey R, Chinnusamy V, Singh NK, Singh AK, Mohapatra T, Sevanthi AM. A novel stay-green mutant of rice with delayed leaf senescence and better harvest index confers drought tolerance. Plants. 2019 Oct;8(10):375.
  41. Rathinam M, Mishra P, Mahato AK, Singh NK, Rao U, Sreevathsa R. Comparative transcriptome analyses provide novel insights into the differential response of Pigeonpea (Cajanus cajan L.) and its wild relative (Cajanus platycarpus (Benth.) Maesen) to herbivory by Helicoverpa armigera (Hübner). Plant molecular biology. 2019 Sep 1;101(1-2):163-82.
  42. Rathinam M, Mishra P, Vasudevan M, Budhwar R, Mahato A, Prabha AL, Singh NK, Rao U, Sreevathsa R. Comparative transcriptome analysis of pigeonpea, Cajanus cajan (L.) and one of its wild relatives Cajanus platycarpus (Benth.) Maesen. PloS one. 2019 Jul 3;14(7):e0218731
  43. Sahashi K, Yamada-Kato N, Maeda T, Kito K, Cha-Um S, Rai V, Tanaka Y, Takabe T. Expression and functional characterization of sugar beet phosphoethanolamine/phosphocholine phosphatase under salt stress. Plant Physiology and Biochemistry. 2019 Sep 1;142:211-6.
  44. Saini N, Koramutla MK, Singh N, Singh S, Singh R, Yadav S, Bhattacharya R, Vasudev S, Yadava DK. Promoter polymorphism in FAE1. 1 and FAE1. 2 genes associated with erucic acid content in Brassica juncea. Molecular Breeding. 2019 May 1;39(5):75.
  45. Saxena S, Kaila T, Chaduvula PK, Singh A, Singh NK, Gaikwad K. Novel chloroplast microsatellite markers in pigeonpea ('Cajanus cajan'L. Millsp.) and their transferability to wild'Cajanus' species. Australian Journal of Crop Science. 2019 Feb;13(2):185.
  46. Sharma S, Kaur R, Solanke AK, Dubey H, Tiwari S, Kumar K. Transcriptome sequencing of Himalayan Raspberry (Rubus ellipticus) and development of simple sequence repeat markers. 3 Biotech. 2019 Apr 1;9(4):161.
  47. Shingote PR, Mithra SA, Sharma P, Devanna NB, Arora K, Holkar SK, Khan S, Singh J, Kumar S, Sharma TR, Solanke AU. LTR retrotransposons and highly informative ISSRs in combination are potential markers for genetic fidelity testing of tissue culture-raised plants in sugarcane. Molecular Breeding. 2019 Feb 1;39(2):25.
  48. Singh D, Singh B, Mishra S, Singh AK, Singh NK. Candidate gene based association analysis of salt tolerance in traditional and improved varieties of rice (Oryza sativa L.). Journal of Plant Biochemistry and Biotechnology. 2019 Mar 11;28(1):76-83.
  49. Singh D, Singh CK, Taunk J, Jadon V, Pal M, Gaikwad K. Genome wide transcriptome analysis reveals vital role of heat responsive genes in regulatory mechanisms of lentil (Lens culinaris Medikus). Scientific reports. 2019 Sep 10;9(1):1-9.
  50. Singh S, Chopperla R, Khan S, Reddy N, Padaria JC, Solanke AU. Identification and characterization of catalase genes in Eleusine coracana under abiotic stresses. Biologia plantarum. 2019 Jan 1;63:440-7.
  51. Sinha SK, Tyagi A, Mandal PK. External nitrogen and carbon source-mediated response on modulation of root system architecture and nitrate uptake in wheat seedlings. Journal of Plant Growth Regulation. 2019 Mar 15;38(1):283-97.
  52. Sureshkumar V, Dutta B, Kumar V, Prakash G, Mishra DC, Chaturvedi KK, Rai A, Sevanthi AM, Solanke AU. RiceMetaSysB: a database of blast and bacterial blight responsive genes in rice and its utilization in identifying key blast-resistant WRKY genes. Database. 2019 Jan 1;2019
  53. Tarafdar A, Vishwakarma H, Gothandapani S, Bhati M, Biswas K, Prakash A, Chaturvedi U, Solanke AU, Padaria JC. A quick, easy and cost-effective in planta method to develop direct transformants in wheat. 3 Biotech. 2019 May 1;9(5):180.
  54. Tribhuvan KU, SV AM, Sharma P, Das A, Kumar K, Tyagi A, Solanke AU, Sharma R, Jadhav PV, Raveendran M, Fakrudin B. Identification of genomic SSRs in cluster bean (Cyamopsis tetragonoloba) and demonstration of their utility in genetic diversity analysis. Industrial Crops and Products. 2019 Jul 1;133:221-31.
  55. Tripathy K, Singh B, Misra G, Singh NK. Identification, distribution and comparative analysis of microsatellites in the chloroplast genome of Oryza species. Indian J. Genet. 2019 Aug 1;79(3):536-44.      0.255
  56. Tyagi A, Sharma P, Saxena S, Sharma R, Mithra SA, Solanke AU, Singh NK, Sharma TR, Gaikwad K. The genome size of clusterbean (Cyamopsis tetragonoloba) is significantly smaller compared to its wild relatives as estimated by flow cytometry. Gene. 2019 Jul 30; 707: 205-11
  57. Vishwakarma H, Sharma J, Solanke AU, Singh GP and Padaria J Isolation and Characterization of Stress Inducible Protein (TaSti/Hop) from Heat-Tolerant Wheat Cultivar C306. Research Journal of Biotechnology, (2019)14 (6): 111-121 (IF 0.21)
  58. Zauva L, Dhatwalia D, Subramanian S, Chamola R, Bhattacharya RC Constitutive expression of an endogenous sugar transporter gene SWEET11 in Indian mustard Brassica juncea and its effect thereof on mustard aphids. The Indian Journal of Agricultural Sciences (In press) 2019


Updated date: 06/03/2021 - 12:31